
Sentieon Genomic Software Suite
Overview
Sentieon provides a software-only solution for complete secondary analysis, from comparison to variation detection. Sentieon software faithfully implements the mathematical model of the BWA/GATK/Mutect2 gold standard. Under the premise of ensuring that the results fully match the gold standard, the software operation efficiency is increased by more than 10 times. Currently, Sentieon is suitable for data generated by Illumina or BGI/MGI sequencers. Since Sentieon officially launched its software products in 2015, it has won first place in international life credit contests many times. It has been widely tested and approved by hundreds of companies and scientific research institutions, including: • Many large multinational pharmaceutical companies, sequencing service providers, and molecular diagnostic companies around the world. • Hospitals and medical research institutions, including the Orien project led by 15 major US hospitals and pharmaceutical companies • Government agencies: including the US Drug Administration, National Health Administration, etc. • Schools and research institutions: including universities such as Harvard, Yale, Stanford, and Cornell in the US, the Chinese Academy of Sciences, Fudan University, Shanghai Jiaotong University, Sun Yat-sen University, etc. Application scenarios include: • Population cohort sequencing, including large sample size whole genome sequencing and population cohort projects, • Genetic disease diagnosis: such as clinical whole genome/exome/panel sequencing, • Tumor diagnosis, such as accurately detecting tumor genetic mutations from frozen, FFPE, or blood samples, • Agricultural genomics, such as analyzing samples containing oversized genomes or complex chromosomes, such as animals and plants. Up to now, Sentieon has tested 40 PB of data and millions of samples, totaling more than 80 million cores, and has been quoted many times in publications including NEJM, Cell, Nature, and other world-class influencing factors.
Highlights
- Industrial-grade software implementation and quality control ensure software stability and production reliability. Sentieon reduced the analysis time from FastQ to VCF to 1/10 of GATK, with a consistency of 0.9996. At the same time, Sentieon software does not perform any downsampling, can efficiently process any sequencing depth, ensure the accuracy of results, and meet the strict requirements of clinical applications.
- Sentieon DNAscope and tnScope further improve algorithms for detecting germ line and tumor variants. Combined with machine learning, they accurately correct system deviations in the sequencing process through machine learning, and further improve accuracy on Illumina and MGI sequencers.
- Software-only solution with flexible support for x86 and ARM architecture processors, easy to expand, deploy and upgrade.
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Sentieon Genomic Software Suite
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Returns are currently not supported, but you can cancel anytime
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Usage information
Delivery details
64-bit (x86) Amazon Machine Image (AMI)
Amazon Machine Image (AMI)
An AMI is a virtual image that provides the information required to launch an instance. Amazon EC2 (Elastic Compute Cloud) instances are virtual servers on which you can run your applications and workloads, offering varying combinations of CPU, memory, storage, and networking resources. You can launch as many instances from as many different AMIs as you need.
Version release notes
Current latest version
Additional details
Usage instructions
After starting the instance, you can connect to the instance via SSH, and the user name is sentieon. After logging in to the instance, test sentieon, run the command: sh sentieon_quickstart/sentieon_quickstart.sh, open /home/sentieon/sentieon_quickstart/result/run.log to view results. For specific use of the software, please check the README in the root directory (/home/sentieon/ directory) or the official website support: https://support.sentieon.com/manual/ .
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Support
Vendor support
To provide 7*24 enterprise-level support, you can contact our technical support team via email (sentieon@basebit.ai ) or the WeChat account “Sentieon” back office. Please contact us via email or WeChat back office to request a trial.
Amazon Web Services infrastructure support
Amazon Web Services Support is a one-on-one, fast-response support channel that is staffed 24x7x365 with experienced and technical support engineers. The service helps customers of all sizes and technical abilities to successfully utilize the products and features provided by Amazon Web Services.